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Tomato growers are a passionate bunch. Some of us spend long hours combing over seed catalogs and nursery benches full of plants to select the perfect tomato varieties for our garden. We plant, tend, prune, fertilize, stake, and otherwise care for our tomato plants with a dedication rivaled only by our dedication to our human family. But, even with all that care and attention, sometimes a tomato plant disease strikes our garden. Today, let’s review some of the most common tomato plant diseases and discuss ways to prevent and manage them, without resorting to synthetic chemicals for control.
Types of tomato diseases
Unfortunately, there are several pathogens that can cause tomato plant disease. I’m going to introduce you to several specific tomato diseases later in this article, but before I get to that, it’s important to talk briefly about the different types of pathogens and how to prevent them from striking your garden in the first place.
Some tomato disease pathogens are fungal organisms while others are bacterial or even viral. Different regions of North America are affected by different tomato pathogens, and rates of infection are dependant on many factors, including wind patterns, temperature, humidity, varietal resistance, and plant health, to name just a few. It’s important to remember that tomato plants that are healthy and properly cared for will often show more resistance to tomato plant disease, so ensuring your tomato crop has ample moisture and healthy, fertile soil is a must.

Preventing tomato plant disease
Other than making sure your tomato plants are happy and healthy, there are a few other things you can do to help prevent tomato plant diseases. Here are nine tips to get you started on the road to disease-free, productive tomato plants:
- Rotate your crops. Since many tomato pathogens live in the soil, plant tomatoes in a different spot in the garden each year.
- Pinch off leaves with any signs of disease immediate and dispose of them in the trash to keep a possible infection from spreading.
- Don’t work in the garden when tomato foliage is wet or you may inadvertently spread pathogens from plant to plant.
- Choose disease-resistant varieties when selecting which types of tomatoes to grow.
- Remove all diseased tomato plant debris at the end of the growing season and burn it or toss it in the trash. Do not put diseased foliage in the compost pile.
- If you keep your tomato plants from one year to the next (here are 4 ways to overwinter tomato plants), be sure the plants are disease-free when you overwinter them.
- Provide adequate air circulation around each plant. Here’s our guide to spacing tomatoes properly.
- Mulch your tomato plants well at the start of the season. Two or three inches of compost, leaf mold, straw, or hay serves to keep soil-dwelling fungal spores from splashing up onto the lower leaves when it rains.
- Try to keep the foliage dry whenever possible. Hand irrigation or soaker hoses allow you to target the water on the root zone. The splash from overhead sprinklers can spread disease and wet foliage promotes fungal issues.
- Disinfect the empty pots if you grow your tomatoes in containers, using a 10% bleach solution at the end of the growing season and replace the spent potting soil with a new mix every spring.
Follow every prevention tip you can to keep your tomato plants from being ravaged by diseases like this one.
6 Common tomato plant diseases
Despite your best efforts at preventing tomato diseases, they may still get a foothold in your garden from time to time. Here’s the low-down on six of the most common tomato plant diseases with information on identifying, preventing, and managing each of them.
Early blight
Identify: This common tomato plant disease appears as bulls-eye-shaped brown spots on the lower leaves of a plant. Often the tissue around the spots will turn yellow. Eventually, infected leaves will fall off the plant. In most cases, the tomatoes will continue to ripen, even as the disease symptoms progress up the plant.
Prevent: The early blight pathogen (Alternaria solani) lives in the soil and once a garden has shown signs of the early blight fungus, it’s there to stay because the organism easily overwinters in the soil, even in very cold climates. Fortunately, most tomatoes will continue to produce even with moderately severe cases of early blight. To prevent this tomato fungal disease, mulch plants with a layer of newspaper topped with untreated grass clippings, straw, leaf mold, or finished compost immediately after they are planted. This mulch forms a protective barrier, preventing the soil-dwelling spores from splashing up out of the soil and onto the plant.
Manage: Once the fungus strikes, organic fungicides based on Bacillus subtilis or copper can help prevent or stop the spread of this tomato plant disease. Bicarbonate fungicides are also effective (including BiCarb, GreenCure, etc).

Fusarium wilt
Identify: The pathogen that causes Fusarium wilt (Fusarium oxysporum) is generally more common in warm, southern regions where this tomato plant disease can wipe out entire fields. Symptoms include drooping leaf stems. Sometimes an entire branch may wilt, often starting with the lower portion of the plant and then progressing upwards until the whole plant collapses. To confirm an infection, cut the main stem of the plant open and look for dark streaks running lengthwise through the stem. Sometimes there are also dark cankers at the base of the plant
Prevent: The spores of this tomato plant disease live in the soil and can survive for many years. They’re spread by equipment, water, plant debris, and even people and animals. The best method of prevention is to plant resistant varieties if you’ve had trouble with Fusarium wilt in the past. Also disinfect tomato cages and stakes with a 10% bleach solution at the end of every season.
Manage: Once this tomato plant disease strikes, there’s little you can do to control it. Instead, focus on preventing it for future years. Soil solarization can help kill fungal spores in the top few inches of soil, and crop rotation is key. There are also several biological fungicidal drenches that can be applied to soil (look for one based on the bacteria Streptomyces griseoviridis called MycoStop® or a granular one based on the fungus Trichoderma virens called Soil Guard®). These products may help prevent the infection from colonizing the roots of future crops.
Late blight
Identify: Late blight (Phytophthora infestans) is among the most destructive tomato plant diseases. Thankfully, it’s not very common, especially in the north where it doesn’t survive winter’s freezing temperatures without a host plant. Late blight is caused by a fungus, and it creates irregularly shaped splotches that are slimy and water-soaked. Often, the splotches occur on the top-most leaves and stems first. Eventually, entire stems “rot” on the vine, turning black and slimy. There may also be patches of white spores on the leaf undersides. In the north, the pathogen overwinters in buried potato tubers. In the south, it easily survives the winter.
Prevent: The spores of this disease are fast-spreading, moving on the wind for miles. If you live in the northern half of the continent, do not purchase potatoes and tomatoes that were grown in the south as you may inadvertently introduce late blight spores to your garden. This is not a common pathogen, but if late blight is reported in your area, there is little you can do to prevent the disease because the spores spread so rapidly. Plant only locally grown plants to help keep the pathogen out of your area.
Manage: Once late blight strikes, there is little you can do. Tear out the plants, put them in a garbage bag, and throw them out to keep the disease from spreading. Organic fungicides based on Bacillus subtilis are somewhat effective in preventing this tomato plant disease when it’s first discovered in your area.

Septoria leaf spot
Identifiy: Appearing as tiny, round splotches on the leaves, this tomato disease (Septoria lycopersici) typically starts on the lowest leaves first. The spots have dark brown edges and lighter centers, and there are usually many spots on each leaf. Infected leaves eventually turn yellow and then brown, and fall off.
Prevent: Remove diseased tomato plants at the end of the season to prevent the spores from overwintering in the garden. Cut off and destroy infected leaves as soon as you spot them and disinfect pruning equipment before moving from one plant to another.
Manage: Organic fungicides based on copper or Bacillus subtilis are effective against septoria leaf spot, especially when used as a preventative measure.

Southern bacterial wilt
Identify: Unfortunately, once present, Southern bacterial wilt (Ralstonia solanacearum) is a tomato plant disease that spreads like wildfire. It’s soil-borne, but the bacteria that cause this tomato disease can travel by soil, water, plant debris, and even on clothes, tools, and skin. It’s naturally found in tropical regions and greenhouses, but it can arrive in the garden via infected plants that were purchased from other areas. Initial symptoms include the wilting of just a few leaves on a plant, while the rest of the foliage appears healthy. Over time, more and more leaves wilt and turn yellow until all the leaves succumb, though the stem remains upright. Slimy ooze threads out of the cut stems, and when they’re placed in water, milky streams of bacteria stream out of the cut.
Prevent: Southern bacterial wilt is soil borne and can survive for long periods in the soil on roots and plant debris. Like many other tomato diseases, it favors high temperatures and high humidity. The best way to prevent this disease is to purchase and plant only locally grown plants, or grow your own plants from seed. Southern bacterial wilt is more common in warmer regions, but has been found in Massachusetts and other northern regions as well.
Manage: There is no cure for this disease. Once confirmed, immediately remove infected plants and discard them in the trash.
Verticillium wilt
Identify: This fungal disease is caused by several soil-borne pathogens (Verticillium spp.). When present in a tomato plant, they block the vascular tissue in the plant and cause the leaves and stems to wilt. Symptoms progress slowly, often one stem at a time. Eventually, the entire plant yellows and withers. To confirm diagnosis, cut through the main stem of the plant and look for dark brown discoloration inside. Verticillum wilt is most problematic in late summer.
Prevent: Verticillium fungi can survive for many years in the soil and on plants. They thrive in slightly cooler summer temperatures (between 70 and 80 degrees F). Plant only resistant varieties.
Manage: Once verticillium wilt occurs, there’s little you can do to control the current year’s infection. Instead, focus on preventing this tomato plant disease in future years. Soil solarization will help kill the fungal spores in the top few inches of soil. Practice crop rotation: do not plant other members of the same plant family in that same planting area for at least four years after the infection.
Many soil-borne tomato diseases aren’t as problematic when the plants are grown in containers. Check out this video introducing 5 of the best varieties of tomatoes for growing in containers.
With an eye toward prevention and employing early management practices as soon as a disease is spotted, you’ll be able to grow a terrific crop of tomatoes each and every season.
For more on growing great tomatoes, check out the following posts:
- The best companion plants for tomatoes
- Tomato growing secrets for a big harvest
- 5 Tips for growing tomatoes in raised beds
- How to grow tomatoes from seeds
Do you have a favorite tomato variety you grow every year? We’d love to hear about it in the comment section below!





My tomato plants have never developed. They are just a small basketball sized clump of deformed leaves and stems. Not many flowers and fruit at all
Is it possible that your plants were exposed to herbicides? If you put weed and feed on your lawn and it came into the garden via rainwater, that will cause deformation of the leaves and stunted growth. Make sure you don’t use treated grass clippings in your lawn or compost pile either.
Hi Jessica,
We had heavy rains from where I am at and noticed that there were black mildew like spots on my tomato leaves. Can this be cured? Something can be done about it or should I start over? They are on delicious and purple Cherokee on flowering stage.
Use an organic fungicide based on Bacillus subtilis as described in the article.
The bottom of my tomatoes are rotting every one on three plants
Sounds like classic blossom end rot. It’s not a disease but rather a physiological disorder caused by a lack of calcium in the growing fruit. Calcium can only get into the plant with water, so while there’s likely plenty of calcium in your soil, it can’t get into the plant due most often to inconsistent watering. Tomatoes must be watered very deeply and be kept consistently moist. The plants should not be allowed to completely dry out between watreings. Dig down into the soil after you water and the moisture should go down at least 5 inches into the soil. If it doesn’t, you need to water more deeply.
Such helpful comments. I have an indeterminate tomato plant in a pot getting routine deep watering. The flowers form in profusion but before the fruit appears the blossom stalk will yellow, bend and then break off. This started before temps reached high 80’s and 90’s. The plant appears healthy and was fertilizer with a stake fertilizer for tomatoes. The plant next to it is of a different variety, is loaded with cherry tomatoes and continues to produce.
Hi Patrick – Sounds like it might be a varietal issue. Beefsteak-type tomatoes often drop several flowers from each cluster, allowing only one to remain and form a single large fruit. It is also possible that the flowers are not being pollinated properly. Tomato blossoms are self-fertile, but they need to be “buzzed” by bumblebees (or strong wind or plant movement) in order for the pollen to be knocked loose. If you don’t have enough bumblebees around, you could try holding an electric toothbrush on the flower stem, just beneath the bloom. Hold it there for about three to five seconds. That’s enough to knock the pollen loose and fertilize the flower. Mimics the buzz pollination of bumblebees.
Thank you for your post and participating in the discussion below, Jessica!
A few of our tomato transplants seemed to succumb to damping off with the cold wet Calgary spring. Now 4 of our more established plants also have browning and thinning at the stem at soil level. They are receiving less daylight than the others. Do you think this is a different type of infection? Can anything be done?
Is it possible that you have cutworms in your soil? They sometimes chew around the exterior of the stems at soil level. Also, be sure to keep your mulch from touching the stem. It could hold excess moisture against the stem and cause rot.
Hi there! Jenny from Wisconsin here! I planted my tomato plant in a pot like I usually do- changed the soil and all that. The plant was doing fantastic. Overnight the leaves started to look brown an wilted- the brown is really on the edges while the rest of the leaf is green. I gave the plant miracle grow tomato food and it has only gotten worse. Within 3 days the whole plant has brown edged leaves. Is this fixable? OR should I buy a new plant and start over. 🙁 The weather has been pretty nice- sunny, some rain and 70-80 temps.
Sounds like you may have over-fertilized. Chemical-based fertilizers, like miracle grow, are based on salts. When you add too much of them, the salts build up in the leaf edges and cause burns like the ones you describe. I would flush the pot out with lots and lots of water, allowing it to drain out the hole in the bottom. Then don’t fertilize again for a month, and use an organic liquid fertilizer instead which has a reduced chance of fertilizer burn.
I’m loving the information here. I’m a new tomato grower with 5 plants in very large clay pots elevated onto bricks for drainage. I planted with bag soil that included fertilizer and added a couple inches of shaved pine mulch on top of each. My 3 determinant tomato plants are doing great but one indeterminate plants has a problem with brown spots on leaves in middle and jagged cuts along edges, but no yellowing at all. I have pictures of the front and back of plants and just recently it has spread to neighbor leaves that touched the plant. I don’t know if it’s a fungus or a bug and I need help. Wish I could post a pic. Huh. Today I cut all all effected leaves and on they plant that’s only 12-15” y’all I cut at least the bottom 8” of stems off and and leaves or stems on neighboring plants too. Is there a way to send you a picture to get the right fix?? Thank you for all you do.
Hi Greg – We aren’t able to do individual consults like that, but it does sound like it could be a fungal pathogen. You did the right thing by trimming off all the infected leaves. I would suggest using a natural fungicide such as Serenade as well.
Excellent article, Jessica. Thank you so much.
I have had luck with Iron Lady tomatoes here in Maryland. They are the only tomato that has been able to last most of the season without dying. The fruit are not as luscious as other varieties, but the plant is not dead, either. They have to be grown from seed as they are not available in nurseries, Home Depot, or Lowes.
I’ve heard good things about Iron Lady’s disease resistance. I haven’t tried them myself, because I was worried about the flavor. Sounds like they might be a good choice to try, though, if your disease pressure is really high. Thanks for the tip!